The functions adjusts a vector of p-values for multiple testing
Usage
multAdjust(
pvals,
adjust = "adaptBH",
trueNullMethod = "convest",
pTrueNull = NULL,
verbose = FALSE
)
Arguments
- pvals
numeric vector with p-values
- adjust
character specifying the method used for adjustment. Can be
"lfdr"
,"adaptBH"
, or one of the methods provided byp.adjust
.- trueNullMethod
character indicating the method used for estimating the proportion of true null hypotheses from a vector of p-values. Used for the adaptive Benjamini-Hochberg method for multiple testing adjustment (chosen by
adjust = "adaptBH"
). Accepts the provided options of themethod
argument ofpropTrueNull
:"convest"
(default),"lfdr"
,"mean"
, and"hist"
. Can alternatively be"farco"
for the "iterative plug-in method" proposed by Farcomeni (2007).- pTrueNull
proportion of true null hypothesis used for the adaptBH method. If
NULL
, the proportion is computed using the method defined viatrueNullMethod
.- verbose
if
TRUE
, progress messages are returned.